The exit status of the task that caused the workflow execution to fail was: 0.
The full error message was:
Error executing process > 'compute_enrichment_stats (1)' Caused by: Missing output file(s) `layered-analysis.phip` expected by process `compute_enrichment_stats (1)` Command executed: ls -la Command exit status: 0 Command output: total 287 drwxrws--- 2 jgallowa overbaugh_j_grp 288 Jul 7 17:14 . drwxrws--- 27 jgallowa overbaugh_j_grp 1200 Jul 7 17:14 .. -rw-rw---- 1 jgallowa overbaugh_j_grp 0 Jul 7 17:14 .command.begin -rw-rw---- 1 jgallowa overbaugh_j_grp 0 Jul 7 17:14 .command.err -rw-rw---- 1 jgallowa overbaugh_j_grp 0 Jul 7 17:14 .command.log -rw-rw---- 1 jgallowa overbaugh_j_grp 0 Jul 7 17:14 .command.out -rw-rw---- 1 jgallowa overbaugh_j_grp 10450 Jul 7 17:14 .command.run -rw-rw---- 1 jgallowa overbaugh_j_grp 23 Jul 7 17:14 .command.sh -rw-r--r-- 1 jgallowa overbaugh_j_grp 0 Jul 7 17:14 .command.trace lrwxrwxrwx 1 jgallowa overbaugh_j_grp 135 Jul 7 17:14 07-06-21-bowtie2.phip -> /fh/fast/overbaugh_j/PhIP/phage-dms-vacc-analysis/nextflow-pipeline-config/temp/47/7f265e5f3836a0826cb553e26f9e38/07-06-21-bowtie2.phip lrwxrwxrwx 1 jgallowa overbaugh_j_grp 83 Jul 7 17:14 alignment-stats.py -> /fh/fast/overbaugh_j/PhIP/phage-dms-vacc-analysis/analysis-image/alignment-stats.py Work dir: /fh/fast/overbaugh_j/PhIP/phage-dms-vacc-analysis/nextflow-pipeline-config/temp/bb/7b4d83efba30bf121d05b1e33d1289 Tip: view the complete command output by changing to the process work dir and entering the command `cat .command.out`
nextflow -C phipflow.config.bt2 run PhIP-analysis.nf -with-report output_local/nextflow_report.html -work-dir temp/ -resume5f8d4a113b03fb4c69ef7ffea7772c9d044b3682-b63d-41a3-85a2-316929b7b4beThese plots give an overview of the distribution of resource usage for each process.
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