Nextflow workflow report

[clever_swartz] (resumed run)

Workflow execution completed unsuccessfully!

The exit status of the task that caused the workflow execution to fail was: 0.

The full error message was:

Error executing process > 'compute_enrichment_stats (1)'

Caused by:
  Missing output file(s) `layered-analysis.phip` expected by process `compute_enrichment_stats (1)`

Command executed:

  ls -la

Command exit status:
  0

Command output:
  total 287
  drwxrws---  2 jgallowa overbaugh_j_grp   288 Jul  7 17:14 .
  drwxrws--- 27 jgallowa overbaugh_j_grp  1200 Jul  7 17:14 ..
  -rw-rw----  1 jgallowa overbaugh_j_grp     0 Jul  7 17:14 .command.begin
  -rw-rw----  1 jgallowa overbaugh_j_grp     0 Jul  7 17:14 .command.err
  -rw-rw----  1 jgallowa overbaugh_j_grp     0 Jul  7 17:14 .command.log
  -rw-rw----  1 jgallowa overbaugh_j_grp     0 Jul  7 17:14 .command.out
  -rw-rw----  1 jgallowa overbaugh_j_grp 10450 Jul  7 17:14 .command.run
  -rw-rw----  1 jgallowa overbaugh_j_grp    23 Jul  7 17:14 .command.sh
  -rw-r--r--  1 jgallowa overbaugh_j_grp     0 Jul  7 17:14 .command.trace
  lrwxrwxrwx  1 jgallowa overbaugh_j_grp   135 Jul  7 17:14 07-06-21-bowtie2.phip -> /fh/fast/overbaugh_j/PhIP/phage-dms-vacc-analysis/nextflow-pipeline-config/temp/47/7f265e5f3836a0826cb553e26f9e38/07-06-21-bowtie2.phip
  lrwxrwxrwx  1 jgallowa overbaugh_j_grp    83 Jul  7 17:14 alignment-stats.py -> /fh/fast/overbaugh_j/PhIP/phage-dms-vacc-analysis/analysis-image/alignment-stats.py

Work dir:
  /fh/fast/overbaugh_j/PhIP/phage-dms-vacc-analysis/nextflow-pipeline-config/temp/bb/7b4d83efba30bf121d05b1e33d1289

Tip: view the complete command output by changing to the process work dir and entering the command `cat .command.out`
Run times
07-Jul-2021 10:13:54 - 07-Jul-2021 10:14:45 (duration: 50.7s)
  0 succeeded  
  1902 cached  
  0 ignored  
  1 failed  
Nextflow command
nextflow -C phipflow.config.bt2 run PhIP-analysis.nf -with-report output_local/nextflow_report.html -work-dir temp/ -resume
CPU-Hours
61.4 (100% cached, 0% failed)
Launch directory
/fh/fast/overbaugh_j/PhIP/phage-dms-vacc-analysis/nextflow-pipeline-config
Work directory
/fh/fast/overbaugh_j/PhIP/phage-dms-vacc-analysis/nextflow-pipeline-config/temp
Project directory
/fh/fast/overbaugh_j/PhIP/phage-dms-vacc-analysis/nextflow-pipeline-config
Script name
PhIP-analysis.nf
Script ID
5f8d4a113b03fb4c69ef7ffea7772c9d
Workflow session
044b3682-b63d-41a3-85a2-316929b7b4be
Workflow profile
standard
Nextflow version
version 20.07.1, build 5412 (24-07-2020 15:18 UTC)

Resource Usage

These plots give an overview of the distribution of resource usage for each process.

CPU

Memory

Job Duration

I/O

Tasks

This table shows information about each task in the workflow. Use the search box on the right to filter rows for specific values. Clicking headers will sort the table by that value and scrolling side to side will reveal more columns.

(tasks table omitted because the dataset is too big)